新サーバもなんとなく動いているようなので、dmesgを公開してみる。
Copyright (c) 1992-2005 The FreeBSD Project.
Copyright (c) 1979, 1980, 1983, 1986, 1988, 1989, 1991, 1992, 1993, 1994
	The Regents of the University of California. All rights reserved.
FreeBSD 6.0-STABLE #0: Sat Nov 19 14:12:34 JST 2005
    root@false.flets.cds.ne.jp:/usr/obj/usr/src/sys/FALSE
WARNING: debug.mpsafenet forced to 0 as ipsec requires Giant
WARNING: MPSAFE network stack disabled, expect reduced performance.
Timecounter "i8254" frequency 1193182 Hz quality 0
CPU: Intel(R) Pentium(R) M processor 1.70GHz (1700.07-MHz 686-class CPU)
  Origin = "GenuineIntel"  Id = 0x6d6  Stepping = 6
  Features=0xafe9fbbf
  Features2=0x180
real memory  = 1039007744 (990 MB)
avail memory = 1007796224 (961 MB)
ACPI APIC Table: 
ioapic0  irqs 0-23 on motherboard
npx0: [FAST]
npx0:  on motherboard
npx0: INT 16 interface
acpi0:  on motherboard
acpi0: Power Button (fixed)
pci_link0:  irq 3 on acpi0
pci_link1:  irq 9 on acpi0
pci_link2:  irq 10 on acpi0
pci_link3:  irq 5 on acpi0
pci_link4:  irq 5 on acpi0
pci_link5:  irq 10 on acpi0
pci_link6:  irq 11 on acpi0
pci_link7:  irq 11 on acpi0
Timecounter "ACPI-fast" frequency 3579545 Hz quality 1000
acpi_timer0: <24-bit timer at 3.579545MHz> port 0x4008-0x400b on acpi0
cpu0:  on acpi0
acpi_throttle0:  on cpu0
acpi_button0:  on acpi0
acpi_button1:  on acpi0
pcib0:  port 0xcf8-0xcff on acpi0
pci0:  on pcib0
pci0:  at device 0.1 (no driver attached)
pci0:  at device 0.3 (no driver attached)
pcib1:  at device 1.0 on pci0
pci1:  on pcib1
agp0:  port 0xe300-0xe307 mem 0xe0000000-0xe7ffffff,0xe8100000-0xe817ffff irq 16 at device 2.0 on pci0
agp0: detected 32636k stolen memory
agp0: aperture size is 128M
pci0:  at device 2.1 (no driver attached)
uhci0:  port 0xe000-0xe01f irq 16 at device 29.0 on pci0
uhci0: [GIANT-LOCKED]
usb0:  on uhci0
usb0: USB revision 1.0
uhub0: Intel UHCI root hub, class 9/0, rev 1.00/1.00, addr 1
uhub0: 2 ports with 2 removable, self powered
uhci1:  port 0xe100-0xe11f irq 19 at device 29.1 on pci0
uhci1: [GIANT-LOCKED]
usb1:  on uhci1
usb1: USB revision 1.0
uhub1: Intel UHCI root hub, class 9/0, rev 1.00/1.00, addr 1
uhub1: 2 ports with 2 removable, self powered
uhci2:  port 0xe200-0xe21f irq 18 at device 29.2 on pci0
uhci2: [GIANT-LOCKED]
usb2:  on uhci2
usb2: USB revision 1.0
uhub2: Intel UHCI root hub, class 9/0, rev 1.00/1.00, addr 1
uhub2: 2 ports with 2 removable, self powered
ehci0:  mem 0xe8180000-0xe81803ff irq 23 at device 29.7 on pci0
ehci0: [GIANT-LOCKED]
usb3: EHCI version 1.0
usb3: companion controllers, 2 ports each: usb0 usb1 usb2
usb3:  on ehci0
usb3: USB revision 2.0
uhub3: Intel EHCI root hub, class 9/0, rev 2.00/1.00, addr 1
uhub3: 6 ports with 6 removable, self powered
pcib2:  at device 30.0 on pci0
pci2:  on pcib2
skc0:  port 0xd000-0xd0ff mem 0xe8040000-0xe8043fff irq 20 at device 0.0 on pci2
skc0: Marvell Yukon Lite Gigabit Ethernet rev. A3(0x7)
sk0:  on skc0
sk0: Ethernet address: 00:01:80:xx:xx:xx
miibus0:  on sk0
e1000phy0:  on miibus0
e1000phy0:  10baseT, 10baseT-FDX, 100baseTX, 100baseTX-FDX, 1000baseTX-FDX, auto
skc0: [GIANT-LOCKED]
skc1:  port 0xd100-0xd1ff mem 0xe8044000-0xe8047fff irq 21 at device 1.0 on pci2
skc1: Marvell Yukon Lite Gigabit Ethernet rev. A3(0x7)
sk1:  on skc1
sk1: Ethernet address: 00:01:80:xx:xx:xx
miibus1:  on sk1
e1000phy1:  on miibus1
e1000phy1:  10baseT, 10baseT-FDX, 100baseTX, 100baseTX-FDX, 1000baseTX-FDX, auto
skc1: [GIANT-LOCKED]
atapci0:  port 0xd200-0xd27f,0xd300-0xd3ff mem 0xe8049000-0xe8049fff,0xe8000000-0xe801ffff irq 22 at device 2.0 on pci2
ata2:  on atapci0
ata3:  on atapci0
ata4:  on atapci0
fwohci0:  mem 0xe8048000-0xe8048fff irq 23 at device 3.0 on pci2
fwohci0: [GIANT-LOCKED]
fwohci0: OHCI version 1.0 (ROM=1)
fwohci0: No. of Isochronous channels is 8.
fwohci0: EUI64 00:01:80:13:94:5c:05:41
fwohci0: Phy 1394a available S400, 2 ports.
fwohci0: Link S400, max_rec 2048 bytes.
firewire0:  on fwohci0
fwe0:  on firewire0
if_fwe0: Fake Ethernet address: 02:01:80:xx:xx:xx
fwe0: Ethernet address: 02:01:80:xx:xx:xx
sbp0:  on firewire0
fwohci0: Initiate bus reset
fwohci0: node_id=0xc800ffc0, gen=1, CYCLEMASTER mode
firewire0: 1 nodes, maxhop <= 0, cable IRM = 0 (me)
firewire0: bus manager 0 (me)
isab0:  at device 31.0 on pci0
isa0:  on isab0
atapci1:  port 0x1f0-0x1f7,0x3f6,0x170-0x177,0x376,0xf000-0xf00f at device 31.1 on pci0
ata0:  on atapci1
ata1:  on atapci1
pci0:  at device 31.3 (no driver attached)
pci0:  at device 31.5 (no driver attached)
acpi_tz0:  on acpi0
fdc0:  port 0x3f0-0x3f5,0x3f7 irq 6 drq 2 on acpi0
fdc0: [FAST]
fd0: <1440-KB 3.5" drive> on fdc0 drive 0
sio0: <16550A-compatible COM port> port 0x3f8-0x3ff irq 4 flags 0x10 on acpi0
sio0: type 16550A
ppc0:  port 0x378-0x37f,0x778-0x77b irq 7 on acpi0
ppc0: Generic chipset (NIBBLE-only) in COMPATIBLE mode
ppbus0:  on ppc0
ppbus0: IEEE1284 device found /NIBBLE/ECP
Probing for PnP devices on ppbus0:
ppbus0:  PRINTER BJL,BJRaster3,BSCCe
plip0:  on ppbus0
lpt0:  on ppbus0
lpt0: Interrupt-driven port
ppi0:  on ppbus0
atkbdc0:  port 0x60,0x64 irq 1 on acpi0
atkbd0:  irq 1 on atkbdc0
kbd0 at atkbd0
atkbd0: [GIANT-LOCKED]
psm0:  irq 12 on atkbdc0
psm0: [GIANT-LOCKED]
psm0: model Generic PS/2 mouse, device ID 0
pmtimer0 on isa0
orm0:  at iomem 0xd0000-0xd0fff,0xd1000-0xd1fff on isa0
sc0:  at flags 0x100 on isa0
sc0: VGA <16 virtual consoles, flags=0x300>
sio1: configured irq 3 not in bitmap of probed irqs 0
sio1: port may not be enabled
vga0:  at port 0x3c0-0x3df iomem 0xa0000-0xbffff on isa0
Timecounter "TSC" frequency 1700066297 Hz quality 800
Timecounters tick every 1.000 msec
IPsec: Initialized Security Association Processing.
IP Filter: v4.1.8 initialized.  Default = block all, Logging = enabled
ad0: 194481MB  at ata0-master UDMA100
acd0: CDROM  at ata1-master UDMA33
Trying to mount root from ufs:/dev/ad0s1a
Accounting enabled
Promise PDC20579 SATA150 controller なんて出てくるから、SATAの方も繋げば使えるのかも知れない。
問題なのはネットワークインターフェイスで、messagesにときどき以下のメッセージが出るのです。
ぐぐってみたら、まだまだドライバが未完成なのか、解決に至ってはいないようでした。
sk0: watchdog timeout
sk0: link state changed to DOWN
sk0: link state changed to UP
参考URL: http://sources.zabbadoz.net/freebsd/if_sk.html

ちなみに、jdkは1.5を諦めて1.4を入れて解決。subversionに関しては 何故か Makefileの中で APXSと言うマクロが読めなくて失敗してるっぽかったので、makeのオプションに APXS=/usr/local/sbin/apxs を追加してインストールできました。
※ 面倒なので動作確認してませんが・・・。

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